Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usp49Q6P9L4 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm12791-201ENSMUST00000120788 655 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm17877-201ENSMUST00000192578 814 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm44814-201ENSMUST00000207018 434 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 AC154435.1-201ENSMUST00000223938 959 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 CT025551.1-201ENSMUST00000223996 692 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 CT025679.1-201ENSMUST00000227106 449 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 BX649293.1-201ENSMUST00000227437 631 ntBASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp49Q6P9L4 Gm45124-201ENSMUST00000206723 2755 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm10110-202ENSMUST00000228705 3220 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm11380-201ENSMUST00000118067 560 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Mir1956-201ENSMUST00000157748 65 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm22138-201ENSMUST00000158748 128 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Mir6407-201ENSMUST00000184510 101 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm42859-201ENSMUST00000199572 193 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm32111-201ENSMUST00000207689 846 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm19091-201ENSMUST00000208120 978 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm45550-201ENSMUST00000209380 946 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm23680-201ENSMUST00000083162 164 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm37697-201ENSMUST00000195680 1844 ntBASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.18□□□□□ -0.46
Usp49Q6P9L4 Uspl1-202ENSMUST00000100410 3148 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Usp49Q6P9L4 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Usp49Q6P9L4 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Usp49Q6P9L4 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp49Q6P9L4 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms