Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm12028-201ENSMUST00000118065 436 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm12207-201ENSMUST00000143016 494 ntTSL 2 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm40332-201ENSMUST00000199847 938 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm2566-201ENSMUST00000201267 431 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 AC161052.1-201ENSMUST00000222856 910 ntTSL 5 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Krtap6-3-201ENSMUST00000079151 444 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 AC129336.2-201ENSMUST00000218053 3086 ntBASIC12.8□□□□□ -0.36
Scn11aQ9R053 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Snx10-202ENSMUST00000114439 968 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Pex13-ps-201ENSMUST00000118184 1157 ntBASIC12.8□□□□□ -0.36
Scn11aQ9R053 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Gm21631-201ENSMUST00000195041 754 ntBASIC12.8□□□□□ -0.36
Scn11aQ9R053 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Gm33016-201ENSMUST00000221224 677 ntTSL 3 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Gm26861-207ENSMUST00000223253 1095 ntTSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 AC102523.1-201ENSMUST00000228706 1144 ntBASIC12.8□□□□□ -0.36
Scn11aQ9R053 Clec1b-201ENSMUST00000032262 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Scn11aQ9R053 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm12273-201ENSMUST00000137418 1084 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm13393-201ENSMUST00000141935 396 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm11670-201ENSMUST00000143435 511 ntTSL 2 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Tex35-206ENSMUST00000187546 856 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Ndufa4-205ENSMUST00000204978 610 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 AC116797.2-202ENSMUST00000223587 1017 ntBASIC12.79□□□□□ -0.36
Scn11aQ9R053 AC163638.2-201ENSMUST00000224920 827 ntBASIC12.79□□□□□ -0.36
Scn11aQ9R053 AC129017.2-201ENSMUST00000226118 1284 ntBASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm5278-201ENSMUST00000055957 552 ntBASIC12.79□□□□□ -0.36
Scn11aQ9R053 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Mrps14-202ENSMUST00000097193 787 ntTSL 2 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 1700022A22Rik-202ENSMUST00000187130 1458 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Gm8725-201ENSMUST00000221829 1333 ntBASIC12.79□□□□□ -0.36
Scn11aQ9R053 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 A930003A15Rik-201ENSMUST00000100083 746 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Scn11aQ9R053 Msrb1-202ENSMUST00000115262 886 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms