Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Abhd4-201ENSMUST00000041197 2401 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Mir6407-201ENSMUST00000184510 101 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm43692-201ENSMUST00000198236 1062 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm17889-201ENSMUST00000198410 598 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Ap3s1-202ENSMUST00000224622 978 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm26737-201ENSMUST00000181106 2151 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gm19040-201ENSMUST00000203280 4726 ntBASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC12.3□□□□□ -0.44
Smc1aQ9CU62 AC123738.2-201ENSMUST00000223791 1899 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm11801-201ENSMUST00000117807 746 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm11422-201ENSMUST00000118925 1103 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm11244-201ENSMUST00000121243 237 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm10807-201ENSMUST00000177134 795 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm9192-201ENSMUST00000183221 985 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms