Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Mir7076-201ENSMUST00000183519 74 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Mir6958-201ENSMUST00000184207 73 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gm5865-201ENSMUST00000198713 637 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 AC108416.1-201ENSMUST00000228755 1558 ntBASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usp49Q6P9L4 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 AC211878.3-201ENSMUST00000222629 2018 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Mgll-204ENSMUST00000113585 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm12899-201ENSMUST00000120565 551 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm16165-201ENSMUST00000160140 795 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm5210-201ENSMUST00000182150 1010 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm8531-201ENSMUST00000188319 893 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm9102-201ENSMUST00000219250 465 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm18042-201ENSMUST00000219887 790 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 AC099645.1-201ENSMUST00000226476 1105 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usp49Q6P9L4 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp49Q6P9L4 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usp49Q6P9L4 Btc-201ENSMUST00000121044 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp49Q6P9L4 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usp49Q6P9L4 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms