Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upk3aQ9JKX8 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upk3aQ9JKX8 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upk3aQ9JKX8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Upk3aQ9JKX8 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upk3aQ9JKX8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upk3aQ9JKX8 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upk3aQ9JKX8 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
Upk3aQ9JKX8 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
Upk3aQ9JKX8 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upk3aQ9JKX8 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.38■□□□□ 0.69
Upk3aQ9JKX8 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upk3aQ9JKX8 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upk3aQ9JKX8 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Upk3aQ9JKX8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Upk3aQ9JKX8 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms