Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Cdk9Q99J95 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdk9Q99J95 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdk9Q99J95 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Cdk9Q99J95 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdk9Q99J95 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Cdk9Q99J95 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdk9Q99J95 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Cdk9Q99J95 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.14■□□□□ 0.81
Cdk9Q99J95 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdk9Q99J95 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Gm10420-201ENSMUST00000121713 882 ntBASIC20.13■□□□□ 0.81
Cdk9Q99J95 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
Cdk9Q99J95 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdk9Q99J95 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.12■□□□□ 0.81
Cdk9Q99J95 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdk9Q99J95 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.11■□□□□ 0.81
Cdk9Q99J95 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdk9Q99J95 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdk9Q99J95 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.09■□□□□ 0.81
Cdk9Q99J95 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.09■□□□□ 0.81
Cdk9Q99J95 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdk9Q99J95 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Cdk9Q99J95 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdk9Q99J95 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Cdk9Q99J95 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdk9Q99J95 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Cdk9Q99J95 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdk9Q99J95 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdk9Q99J95 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.08■□□□□ 0.8
Cdk9Q99J95 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Cdk9Q99J95 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdk9Q99J95 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.06■□□□□ 0.8
Cdk9Q99J95 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdk9Q99J95 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms