Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scaf4Q6PFF0 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scaf4Q6PFF0 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.86■□□□□ 0.77
Scaf4Q6PFF0 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scaf4Q6PFF0 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scaf4Q6PFF0 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scaf4Q6PFF0 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scaf4Q6PFF0 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scaf4Q6PFF0 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.84■□□□□ 0.77
Scaf4Q6PFF0 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scaf4Q6PFF0 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scaf4Q6PFF0 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.83■□□□□ 0.76
Scaf4Q6PFF0 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scaf4Q6PFF0 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scaf4Q6PFF0 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scaf4Q6PFF0 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scaf4Q6PFF0 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scaf4Q6PFF0 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scaf4Q6PFF0 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.77■□□□□ 0.76
Scaf4Q6PFF0 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms