Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Gm14523-201ENSMUST00000117260 558 ntBASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim40Q3UWA4 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim40Q3UWA4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim40Q3UWA4 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim40Q3UWA4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim40Q3UWA4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.77■□□□□ 0.59
Trim40Q3UWA4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim40Q3UWA4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Gm7332-201ENSMUST00000118351 454 ntBASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim40Q3UWA4 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim40Q3UWA4 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim40Q3UWA4 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Gm11175-201ENSMUST00000116172 543 ntBASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trim40Q3UWA4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms