Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Sox3P53784 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Sox3P53784 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.17■□□□□ 0.66
Sox3P53784 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.17■□□□□ 0.66
Sox3P53784 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.17■□□□□ 0.66
Sox3P53784 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sox3P53784 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.17■□□□□ 0.66
Sox3P53784 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sox3P53784 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sox3P53784 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sox3P53784 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.16■□□□□ 0.66
Sox3P53784 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.16■□□□□ 0.66
Sox3P53784 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sox3P53784 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sox3P53784 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
Sox3P53784 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.16■□□□□ 0.66
Sox3P53784 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Sox3P53784 Gm10849-201ENSMUST00000100397 618 ntBASIC19.15■□□□□ 0.66
Sox3P53784 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Gm37179-201ENSMUST00000194862 823 ntBASIC19.15■□□□□ 0.66
Sox3P53784 Gm42569-201ENSMUST00000200539 472 ntBASIC19.15■□□□□ 0.66
Sox3P53784 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sox3P53784 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Sox3P53784 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.14■□□□□ 0.65
Sox3P53784 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.14■□□□□ 0.65
Sox3P53784 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Sox3P53784 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sox3P53784 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Sox3P53784 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.13■□□□□ 0.65
Sox3P53784 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Sox3P53784 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.13■□□□□ 0.65
Sox3P53784 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Sox3P53784 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.12■□□□□ 0.65
Sox3P53784 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Sox3P53784 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Sox3P53784 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Sox3P53784 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Sox3P53784 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sox3P53784 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Sox3P53784 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sox3P53784 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.11■□□□□ 0.65
Sox3P53784 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.11■□□□□ 0.65
Sox3P53784 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.11■□□□□ 0.65
Sox3P53784 Gm9870-201ENSMUST00000063874 645 ntBASIC19.11■□□□□ 0.65
Sox3P53784 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Sox3P53784 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sox3P53784 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Sox3P53784 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sox3P53784 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sox3P53784 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.1■□□□□ 0.65
Sox3P53784 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Sox3P53784 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
Sox3P53784 Gm43173-201ENSMUST00000202246 593 ntBASIC19.1■□□□□ 0.65
Sox3P53784 Gm10493-201ENSMUST00000097270 612 ntBASIC19.1■□□□□ 0.65
Sox3P53784 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sox3P53784 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sox3P53784 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Sox3P53784 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sox3P53784 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Sox3P53784 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms