Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nedd8P29595 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC18.6■□□□□ 0.57
Nedd8P29595 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Nedd8P29595 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nedd8P29595 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nedd8P29595 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Nedd8P29595 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Nedd8P29595 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nedd8P29595 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Nedd8P29595 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nedd8P29595 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nedd8P29595 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nedd8P29595 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.58■□□□□ 0.57
Nedd8P29595 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Nedd8P29595 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC18.58■□□□□ 0.56
Nedd8P29595 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nedd8P29595 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.58■□□□□ 0.56
Nedd8P29595 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.57■□□□□ 0.56
Nedd8P29595 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Nedd8P29595 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Nedd8P29595 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nedd8P29595 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nedd8P29595 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Nedd8P29595 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nedd8P29595 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.55■□□□□ 0.56
Nedd8P29595 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.55■□□□□ 0.56
Nedd8P29595 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Nedd8P29595 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Nedd8P29595 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Nedd8P29595 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nedd8P29595 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Nedd8P29595 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.54■□□□□ 0.56
Nedd8P29595 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC18.54■□□□□ 0.56
Nedd8P29595 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nedd8P29595 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.53■□□□□ 0.56
Nedd8P29595 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Nedd8P29595 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nedd8P29595 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Nedd8P29595 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nedd8P29595 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nedd8P29595 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC18.52■□□□□ 0.56
Nedd8P29595 Gm44428-201ENSMUST00000204474 874 ntBASIC18.52■□□□□ 0.56
Nedd8P29595 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nedd8P29595 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Nedd8P29595 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.52■□□□□ 0.55
Nedd8P29595 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Nedd8P29595 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms