Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Pcdha4O88689 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha4O88689 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.55■■□□□ 1.2
Pcdha4O88689 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha4O88689 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha4O88689 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC22.54■■□□□ 1.2
Pcdha4O88689 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC22.54■■□□□ 1.2
Pcdha4O88689 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha4O88689 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha4O88689 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha4O88689 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC22.53■■□□□ 1.2
Pcdha4O88689 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC22.53■■□□□ 1.2
Pcdha4O88689 Gm27454-201ENSMUST00000185090 204 ntBASIC22.53■■□□□ 1.2
Pcdha4O88689 Gm43137-201ENSMUST00000198052 594 ntBASIC22.53■■□□□ 1.2
Pcdha4O88689 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 AC124392.1-201ENSMUST00000225172 5324 ntBASIC22.53■■□□□ 1.2
Pcdha4O88689 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Pcdha4O88689 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC22.53■■□□□ 1.2
Pcdha4O88689 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha4O88689 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Pcdha4O88689 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC22.52■■□□□ 1.2
Pcdha4O88689 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC22.52■■□□□ 1.2
Pcdha4O88689 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha4O88689 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
Pcdha4O88689 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Pcdha4O88689 Gm27045-201ENSMUST00000182145 1402 ntBASIC22.51■■□□□ 1.19
Pcdha4O88689 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Pcdha4O88689 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha4O88689 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha4O88689 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha4O88689 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha4O88689 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
Pcdha4O88689 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Pcdha4O88689 Gm5576-201ENSMUST00000075809 1236 ntBASIC22.5■■□□□ 1.19
Pcdha4O88689 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha4O88689 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha4O88689 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC22.49■■□□□ 1.19
Pcdha4O88689 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdha4O88689 Gm38160-201ENSMUST00000193090 2499 ntBASIC22.49■■□□□ 1.19
Pcdha4O88689 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha4O88689 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha4O88689 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha4O88689 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha4O88689 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Pcdha4O88689 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC22.47■■□□□ 1.19
Pcdha4O88689 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Pcdha4O88689 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha4O88689 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha4O88689 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
Pcdha4O88689 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Pcdha4O88689 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha4O88689 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Pcdha4O88689 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 AC152827.1-201ENSMUST00000221143 2189 ntBASIC22.45■■□□□ 1.18
Pcdha4O88689 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Pcdha4O88689 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Pcdha4O88689 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha4O88689 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.45■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms