Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Trim11Q99PQ2 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim11Q99PQ2 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm27441-201ENSMUST00000185000 105 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm37597-201ENSMUST00000191853 382 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 4921527H02Rik-201ENSMUST00000196028 246 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Rnft2-201ENSMUST00000117177 4381 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim11Q99PQ2 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm16166-201ENSMUST00000118291 787 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Mir1896-201ENSMUST00000122641 81 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Mir6546-201ENSMUST00000184460 62 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm4753-201ENSMUST00000188327 1255 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm3551-201ENSMUST00000190750 664 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm37826-201ENSMUST00000195329 322 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm44323-201ENSMUST00000198689 129 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Mt1-202ENSMUST00000211807 1085 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm42815-201ENSMUST00000198787 1470 ntBASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim11Q99PQ2 Gm37264-201ENSMUST00000194916 2192 ntBASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms