Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gm8876-201ENSMUST00000120768 1122 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gm13827-201ENSMUST00000148801 372 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 CT030652.1-201ENSMUST00000227377 1235 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 AC149588.2-201ENSMUST00000228182 1859 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 AC151836.1-201ENSMUST00000228730 1637 ntBASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Usp40Q8BWR4 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Usp40Q8BWR4 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0.01
Usp40Q8BWR4 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC15.08■□□□□ 0.01
Usp40Q8BWR4 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Usp40Q8BWR4 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Platr20-202ENSMUST00000143209 937 ntTSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm7255-201ENSMUST00000187371 908 ntBASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm7047-201ENSMUST00000196224 1063 ntBASIC15.08■□□□□ 0
Usp40Q8BWR4 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm18539-201ENSMUST00000204745 1090 ntBASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Gm37160-201ENSMUST00000193081 1689 ntBASIC15.08■□□□□ 0
Usp40Q8BWR4 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Usp40Q8BWR4 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Usp40Q8BWR4 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm5526-201ENSMUST00000153604 423 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Trav11n-201ENSMUST00000200113 343 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm25514-201ENSMUST00000083860 135 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm10580-201ENSMUST00000097985 396 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm10582-201ENSMUST00000097987 396 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm10583-201ENSMUST00000097988 396 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm29358-202ENSMUST00000187941 3227 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Usp40Q8BWR4 Gm42833-201ENSMUST00000196019 2124 ntBASIC15.07■□□□□ 0
Usp40Q8BWR4 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC15.07■□□□□ 0
Usp40Q8BWR4 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms