Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC14.24□□□□□ -0.13
Trim28Q62318 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
Trim28Q62318 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trim28Q62318 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Gm15625-201ENSMUST00000117617 1093 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Gm12943-201ENSMUST00000119616 210 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Gm6441-201ENSMUST00000120983 696 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
Trim28Q62318 Gm25545-201ENSMUST00000122673 323 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Gm16441-201ENSMUST00000138176 924 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Gm6038-201ENSMUST00000154310 948 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim28Q62318 Gm42710-201ENSMUST00000200608 985 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 AC121567.1-201ENSMUST00000227213 842 ntBASIC14.24□□□□□ -0.13
Trim28Q62318 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 5031425E22Rik-202ENSMUST00000185943 1477 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim28Q62318 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trim28Q62318 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim28Q62318 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Il33-201ENSMUST00000025724 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim28Q62318 Gm6425-201ENSMUST00000136332 790 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Mrto4-ps2-201ENSMUST00000164169 549 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim28Q62318 Mir8111-201ENSMUST00000184463 137 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Gm27316-201ENSMUST00000184884 277 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Trim28Q62318 Gm43244-201ENSMUST00000196994 1285 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Gm44155-201ENSMUST00000203923 412 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim28Q62318 AC174797.2-201ENSMUST00000225835 165 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 AC154436.1-201ENSMUST00000227272 782 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 AC164883.7-201ENSMUST00000228534 851 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Trim28Q62318 Gm5472-201ENSMUST00000178604 1678 ntBASIC14.23□□□□□ -0.13
Trim28Q62318 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim28Q62318 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim28Q62318 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Gm36940-201ENSMUST00000194281 2036 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC14.22□□□□□ -0.13
Trim28Q62318 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Gm22594-201ENSMUST00000104251 130 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC14.22□□□□□ -0.13
Trim28Q62318 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim28Q62318 Gm7445-201ENSMUST00000192115 340 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Gm18123-201ENSMUST00000210874 822 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Gm18122-201ENSMUST00000211390 904 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim28Q62318 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Atf7-201ENSMUST00000096143 390 ntBASIC14.22□□□□□ -0.13
Trim28Q62318 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim28Q62318 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms