Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim9Q8C7M3 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.17□□□□□ -0.46
Trim9Q8C7M3 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC12.17□□□□□ -0.46
Trim9Q8C7M3 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm6641-201ENSMUST00000196100 1315 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm45675-201ENSMUST00000211202 3429 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm16165-201ENSMUST00000160140 795 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm9550-201ENSMUST00000161130 862 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm18753-201ENSMUST00000201000 566 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm39288-201ENSMUST00000210554 446 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm2875-201ENSMUST00000211333 360 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm18042-201ENSMUST00000219887 790 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 AC129975.1-201ENSMUST00000224816 592 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm42851-201ENSMUST00000201325 1411 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Gm44369-201ENSMUST00000204543 2175 ntBASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim9Q8C7M3 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Bcl2-202ENSMUST00000189999 2841 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Mir7076-201ENSMUST00000183519 74 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gm37597-201ENSMUST00000191853 382 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gm43380-201ENSMUST00000200421 220 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gm43947-201ENSMUST00000203019 959 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 AC164618.2-201ENSMUST00000224770 573 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 AC159196.1-201ENSMUST00000225524 377 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 CT025618.1-203ENSMUST00000227008 589 ntBASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim9Q8C7M3 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim9Q8C7M3 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim9Q8C7M3 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
Trim9Q8C7M3 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Trim9Q8C7M3 Gm44999-201ENSMUST00000207456 1493 ntBASIC12.14□□□□□ -0.47
Trim9Q8C7M3 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim9Q8C7M3 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim9Q8C7M3 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms