Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm8601-201ENSMUST00000182096 909 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Mir6387-201ENSMUST00000184042 108 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Gm27441-201ENSMUST00000185000 105 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm43547-201ENSMUST00000197729 328 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm18001-201ENSMUST00000212023 688 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 CT025689.1-201ENSMUST00000225214 283 ntBASIC14.27□□□□□ -0.13
Trim28Q62318 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Trim28Q62318 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim28Q62318 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim28Q62318 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trim28Q62318 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trim28Q62318 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trim28Q62318 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm45124-201ENSMUST00000206723 2755 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm12397-201ENSMUST00000117674 615 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Gm16518-201ENSMUST00000117960 508 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Gm7541-201ENSMUST00000118361 535 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Gm16459-201ENSMUST00000121443 686 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Gm5526-201ENSMUST00000153604 423 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm26208-201ENSMUST00000158677 124 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm44552-201ENSMUST00000205458 1247 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Gm44939-201ENSMUST00000206939 814 ntTSL 3 BASIC14.26□□□□□ -0.13
Trim28Q62318 AC155300.1-201ENSMUST00000219134 480 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm25514-201ENSMUST00000083860 135 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm9035-201ENSMUST00000218318 1697 ntBASIC14.26□□□□□ -0.13
Trim28Q62318 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim28Q62318 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trim28Q62318 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim28Q62318 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim28Q62318 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Trim28Q62318 Magea2-202ENSMUST00000112559 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Mir291b-201ENSMUST00000104838 79 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim28Q62318 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim28Q62318 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm7928-201ENSMUST00000181249 701 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm18555-201ENSMUST00000197935 584 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm45745-201ENSMUST00000211447 1180 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 Nsmce2-203ENSMUST00000227173 1122 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim28Q62318 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim28Q62318 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Trim28Q62318 Gm5697-201ENSMUST00000122295 2482 ntBASIC14.25□□□□□ -0.13
Trim28Q62318 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim28Q62318 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trim28Q62318 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trim28Q62318 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim28Q62318 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Gm1661-201ENSMUST00000077500 1422 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim28Q62318 Prss23os-202ENSMUST00000179361 1362 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms