Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm23604-201ENSMUST00000104311 132 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm14201-201ENSMUST00000117627 289 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm16209-201ENSMUST00000118457 627 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm10171-201ENSMUST00000126220 628 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm16288-201ENSMUST00000137940 367 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm5244-202ENSMUST00000189517 743 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm6562-201ENSMUST00000221903 464 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC154213.1-201ENSMUST00000228234 583 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm10233-201ENSMUST00000089275 628 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm17836-201ENSMUST00000191976 1302 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 AC154354.1-203ENSMUST00000225565 1364 ntBASIC11.75□□□□□ -0.53
Clp1Q99LI9 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Clp1Q99LI9 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm14034-201ENSMUST00000120147 551 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm7928-201ENSMUST00000181249 701 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Mir6359-201ENSMUST00000183668 81 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm37867-201ENSMUST00000192066 1059 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Gm18555-201ENSMUST00000197935 584 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 4933400A11Rik-202ENSMUST00000068894 1217 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 AC155245.1-201ENSMUST00000222266 1804 ntBASIC11.74□□□□□ -0.53
Clp1Q99LI9 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Clp1Q99LI9 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Clp1Q99LI9 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Clp1Q99LI9 Matn2-203ENSMUST00000226766 3252 ntBASIC11.73□□□□□ -0.53
Clp1Q99LI9 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms