Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 CT030195.2-201ENSMUST00000226074 1286 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 AC151836.1-201ENSMUST00000228730 1637 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trim28Q62318 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trim28Q62318 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim28Q62318 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC14.32□□□□□ -0.12
Trim28Q62318 Gm38192-201ENSMUST00000194364 1847 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm38055-201ENSMUST00000195353 2217 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm43963-201ENSMUST00000203466 2488 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Trim28Q62318 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm12950-201ENSMUST00000121683 417 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm25288-201ENSMUST00000122800 265 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm24346-201ENSMUST00000158712 194 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm9916-201ENSMUST00000192943 1228 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm7939-201ENSMUST00000201233 1050 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 BC080696-201ENSMUST00000202858 1218 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm2448-201ENSMUST00000207080 559 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC14.31□□□□□ -0.12
Trim28Q62318 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 BC106175-202ENSMUST00000219344 1213 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm40879-201ENSMUST00000220759 612 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 AC164556.1-201ENSMUST00000221318 751 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 AC154806.7-201ENSMUST00000227998 202 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 AC142266.1-201ENSMUST00000228107 415 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm29245-201ENSMUST00000187332 1416 ntBASIC14.31□□□□□ -0.12
Trim28Q62318 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim28Q62318 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim28Q62318 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim28Q62318 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Mir1249-201ENSMUST00000116791 98 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Gm12461-201ENSMUST00000120231 1239 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Gm26906-201ENSMUST00000180523 1228 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim28Q62318 Gm5801-201ENSMUST00000182247 780 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Gm37301-201ENSMUST00000195412 568 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Gm29763-201ENSMUST00000205306 616 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 AC137871.1-201ENSMUST00000228278 475 ntBASIC14.3□□□□□ -0.12
Trim28Q62318 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Nr1h4-203ENSMUST00000105297 2013 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim28Q62318 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim28Q62318 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm3372-201ENSMUST00000198806 1792 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim28Q62318 Gm11544-201ENSMUST00000120215 382 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Gm5555-201ENSMUST00000120352 1111 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Gm12906-201ENSMUST00000154610 441 ntBASIC14.29□□□□□ -0.12
Trim28Q62318 Gm22876-201ENSMUST00000175450 298 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms