Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm7430-201ENSMUST00000193824 1144 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm17831-201ENSMUST00000205579 900 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 AC159246.1-201ENSMUST00000214478 249 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm2594-201ENSMUST00000214774 742 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm2517-201ENSMUST00000215651 348 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Mgll-204ENSMUST00000113585 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm11628-201ENSMUST00000117568 171 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm13263-201ENSMUST00000121271 838 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Tmem150cos-201ENSMUST00000143245 1216 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm8194-201ENSMUST00000159783 859 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm3329-201ENSMUST00000159873 556 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm29164-201ENSMUST00000185454 1024 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm7600-201ENSMUST00000209657 785 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 AC134860.1-201ENSMUST00000224867 660 ntBASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sh3rf1Q69ZI1 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gm14071-201ENSMUST00000117817 509 ntBASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gm12463-201ENSMUST00000118271 849 ntBASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gm11660-201ENSMUST00000120955 412 ntBASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 AC132901.1-201ENSMUST00000224345 508 ntBASIC11.3□□□□□ -0.6
Sh3rf1Q69ZI1 AC134869.4-202ENSMUST00000224350 837 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms