Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 AC091458.1-201ENSMUST00000220902 1361 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm15004-201ENSMUST00000119192 630 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm38134-201ENSMUST00000191858 1234 ntTSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm43966-201ENSMUST00000203301 612 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm9463-201ENSMUST00000206707 601 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm45550-201ENSMUST00000209380 946 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm18065-201ENSMUST00000221395 526 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm5124-202ENSMUST00000132683 2083 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Sh3rf1Q69ZI1 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Sh3rf1Q69ZI1 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm6831-202ENSMUST00000213025 1673 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm15595-201ENSMUST00000120840 961 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm15566-201ENSMUST00000121130 590 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 AC153505.1-201ENSMUST00000218819 1071 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 AC154290.1-201ENSMUST00000223786 1240 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm45161-201ENSMUST00000207316 2263 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Gm9387-201ENSMUST00000098624 1320 ntBASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sh3rf1Q69ZI1 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm12799-201ENSMUST00000118151 2560 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm11246-201ENSMUST00000120880 345 ntBASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sh3rf1Q69ZI1 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 94.2 ms