Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC13.05□□□□□ -0.32
Scn11aQ9R053 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 CT010480.4-201ENSMUST00000224654 2283 ntBASIC13.05□□□□□ -0.32
Scn11aQ9R053 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Tmigd1-202ENSMUST00000102495 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC13.05□□□□□ -0.32
Scn11aQ9R053 Gm5472-201ENSMUST00000178604 1678 ntBASIC13.05□□□□□ -0.32
Scn11aQ9R053 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Scn11aQ9R053 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm16209-201ENSMUST00000118457 627 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm10171-201ENSMUST00000126220 628 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm5976-201ENSMUST00000180794 996 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm8918-201ENSMUST00000190587 1087 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm42710-201ENSMUST00000200608 985 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm45745-201ENSMUST00000211447 1180 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm10233-201ENSMUST00000089275 628 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm12716-201ENSMUST00000120606 1354 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Slfn3-201ENSMUST00000019130 1816 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm11235-201ENSMUST00000117763 333 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm8659-201ENSMUST00000120024 1084 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm15746-201ENSMUST00000120684 1027 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Platr20-202ENSMUST00000143209 937 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 AC154585.1-201ENSMUST00000218917 997 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 AC174797.2-201ENSMUST00000225835 165 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm6478-201ENSMUST00000099450 742 ntBASIC13.04□□□□□ -0.32
Scn11aQ9R053 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
Scn11aQ9R053 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 AC122273.1-201ENSMUST00000213634 2327 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Slc31a2-202ENSMUST00000107467 868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Mir6934-201ENSMUST00000183965 62 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Wbp1-209ENSMUST00000205023 716 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 AC107752.1-201ENSMUST00000219362 469 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm10238-201ENSMUST00000089689 408 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Mrgpra1-201ENSMUST00000098438 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm8873-201ENSMUST00000217847 1439 ntBASIC13.03□□□□□ -0.32
Scn11aQ9R053 Gm38111-201ENSMUST00000194817 2741 ntBASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 88.9 ms