Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm38271-201ENSMUST00000192296 1603 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gpr68-201ENSMUST00000053668 3099 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm22144-201ENSMUST00000157402 102 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm45575-201ENSMUST00000210283 548 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm45878-201ENSMUST00000211839 241 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm18974-201ENSMUST00000221478 1031 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 AC102523.2-201ENSMUST00000227813 983 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 AC125117.2-201ENSMUST00000228344 1140 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gm5705-201ENSMUST00000066241 711 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 AA474408-201ENSMUST00000098110 3339 ntBASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm5703-201ENSMUST00000186658 3973 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm11956-201ENSMUST00000119525 512 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm25116-201ENSMUST00000157191 122 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm45398-201ENSMUST00000210561 165 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm44663-201ENSMUST00000206898 3150 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm18798-201ENSMUST00000187264 1700 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Gm9519-201ENSMUST00000206108 1337 ntBASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.35□□□□□ -0.59
Sh3rf1Q69ZI1 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Sh3rf1Q69ZI1 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms