Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Pcdh1F7BJK1 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Catsper1-201ENSMUST00000043380 2061 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gm23949-201ENSMUST00000104027 127 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gm38321-201ENSMUST00000195053 235 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gm5869-201ENSMUST00000200248 1257 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gm45575-201ENSMUST00000210283 548 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Gm45161-201ENSMUST00000207316 2263 ntBASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Pcdh1F7BJK1 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm5380-201ENSMUST00000119296 2136 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm14724-201ENSMUST00000118400 537 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm14740-201ENSMUST00000118538 1150 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm4819-201ENSMUST00000182170 1009 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm28071-201ENSMUST00000190355 478 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm9678-201ENSMUST00000198979 1149 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm44044-201ENSMUST00000205178 1089 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm6108-201ENSMUST00000208365 367 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 AC154461.3-201ENSMUST00000224831 573 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 AC118639.2-201ENSMUST00000226289 223 ntBASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Armc8-202ENSMUST00000185524 2820 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Pcdh1F7BJK1 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms