Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Prpf40aQ9R1C7 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Prpf40aQ9R1C7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Prpf40aQ9R1C7 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Prpf40aQ9R1C7 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Prpf40aQ9R1C7 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Prpf40aQ9R1C7 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Prpf40aQ9R1C7 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Prpf40aQ9R1C7 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Prpf40aQ9R1C7 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Prpf40aQ9R1C7 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
Prpf40aQ9R1C7 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Gm7143-201ENSMUST00000222811 859 ntBASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Prpf40aQ9R1C7 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
Prpf40aQ9R1C7 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Prpf40aQ9R1C7 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
Prpf40aQ9R1C7 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 Gm9870-201ENSMUST00000063874 645 ntBASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Prpf40aQ9R1C7 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Prpf40aQ9R1C7 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Prpf40aQ9R1C7 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Prpf40aQ9R1C7 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
Prpf40aQ9R1C7 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Prpf40aQ9R1C7 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Prpf40aQ9R1C7 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Prpf40aQ9R1C7 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms