Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Msh4Q99MT2 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msh4Q99MT2 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msh4Q99MT2 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msh4Q99MT2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msh4Q99MT2 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msh4Q99MT2 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.6■□□□□ 0.73
Msh4Q99MT2 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
Msh4Q99MT2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Msh4Q99MT2 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msh4Q99MT2 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.58■□□□□ 0.72
Msh4Q99MT2 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.58■□□□□ 0.72
Msh4Q99MT2 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Msh4Q99MT2 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msh4Q99MT2 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msh4Q99MT2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.57■□□□□ 0.72
Msh4Q99MT2 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh4Q99MT2 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh4Q99MT2 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Gm9847-201ENSMUST00000052528 599 ntBASIC19.55■□□□□ 0.72
Msh4Q99MT2 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh4Q99MT2 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.55■□□□□ 0.72
Msh4Q99MT2 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Msh4Q99MT2 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh4Q99MT2 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.53■□□□□ 0.72
Msh4Q99MT2 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 Gm12922-201ENSMUST00000120626 809 ntBASIC19.52■□□□□ 0.72
Msh4Q99MT2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 Gm13241-201ENSMUST00000094493 780 ntBASIC19.52■□□□□ 0.72
Msh4Q99MT2 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh4Q99MT2 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh4Q99MT2 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Msh4Q99MT2 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh4Q99MT2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh4Q99MT2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Msh4Q99MT2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh4Q99MT2 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms