Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lsm1Q8VC85 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lsm1Q8VC85 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lsm1Q8VC85 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lsm1Q8VC85 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lsm1Q8VC85 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Lsm1Q8VC85 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Lsm1Q8VC85 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Lsm1Q8VC85 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Lsm1Q8VC85 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lsm1Q8VC85 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lsm1Q8VC85 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lsm1Q8VC85 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lsm1Q8VC85 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lsm1Q8VC85 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lsm1Q8VC85 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lsm1Q8VC85 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Lsm1Q8VC85 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lsm1Q8VC85 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lsm1Q8VC85 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms