Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Vps39Q8R5L3 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps39Q8R5L3 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps39Q8R5L3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps39Q8R5L3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Vps39Q8R5L3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Gm40881-201ENSMUST00000223397 166 ntBASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Vps39Q8R5L3 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps39Q8R5L3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps39Q8R5L3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Vps39Q8R5L3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.19■□□□□ 0.82
Vps39Q8R5L3 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.19■□□□□ 0.82
Vps39Q8R5L3 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps39Q8R5L3 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps39Q8R5L3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps39Q8R5L3 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Vps39Q8R5L3 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps39Q8R5L3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Gm7143-201ENSMUST00000222811 859 ntBASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Vps39Q8R5L3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps39Q8R5L3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps39Q8R5L3 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Vps39Q8R5L3 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps39Q8R5L3 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms