Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 AC124392.1-201ENSMUST00000225172 5324 ntBASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
Ushbp1Q8R370 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC22.65■■□□□ 1.22
Ushbp1Q8R370 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ushbp1Q8R370 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Ushbp1Q8R370 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ushbp1Q8R370 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Ushbp1Q8R370 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ushbp1Q8R370 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ushbp1Q8R370 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
Ushbp1Q8R370 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ushbp1Q8R370 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Ushbp1Q8R370 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC22.63■■□□□ 1.21
Ushbp1Q8R370 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Ushbp1Q8R370 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ushbp1Q8R370 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ushbp1Q8R370 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
Ushbp1Q8R370 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ushbp1Q8R370 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ushbp1Q8R370 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ushbp1Q8R370 AC152827.1-201ENSMUST00000221143 2189 ntBASIC22.59■■□□□ 1.21
Ushbp1Q8R370 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ushbp1Q8R370 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ushbp1Q8R370 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ushbp1Q8R370 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ushbp1Q8R370 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Ushbp1Q8R370 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Ushbp1Q8R370 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Ushbp1Q8R370 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Slc35b2-207ENSMUST00000226086 850 ntBASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ushbp1Q8R370 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ushbp1Q8R370 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms