Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC22.54■■□□□ 1.2
Smarca1Q6PGB8 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 AC152827.1-201ENSMUST00000221143 2189 ntBASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Smarca1Q6PGB8 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Smarca1Q6PGB8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Smarca1Q6PGB8 Gm34220-201ENSMUST00000223001 2709 ntBASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Smarca1Q6PGB8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Smarca1Q6PGB8 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Smarca1Q6PGB8 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Smarca1Q6PGB8 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Smarca1Q6PGB8 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Smarca1Q6PGB8 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.49■■□□□ 1.19
Smarca1Q6PGB8 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 AC140930.3-201ENSMUST00000222935 274 ntBASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC22.48■■□□□ 1.19
Smarca1Q6PGB8 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Smarca1Q6PGB8 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Gm7143-201ENSMUST00000222811 859 ntBASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
Smarca1Q6PGB8 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.19
Smarca1Q6PGB8 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Smarca1Q6PGB8 Gm12821-201ENSMUST00000120022 600 ntBASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Smarca1Q6PGB8 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 160.4 ms