Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.5■□□□□ 0.87
Six4Q61321 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Six4Q61321 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Six4Q61321 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Six4Q61321 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Six4Q61321 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Six4Q61321 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Six4Q61321 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
Six4Q61321 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.48■□□□□ 0.87
Six4Q61321 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Six4Q61321 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Six4Q61321 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.47■□□□□ 0.87
Six4Q61321 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Six4Q61321 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Six4Q61321 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Six4Q61321 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Six4Q61321 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Six4Q61321 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Six4Q61321 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Six4Q61321 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Six4Q61321 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Six4Q61321 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.46■□□□□ 0.87
Six4Q61321 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.46■□□□□ 0.87
Six4Q61321 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.46■□□□□ 0.87
Six4Q61321 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Six4Q61321 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Six4Q61321 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.45■□□□□ 0.86
Six4Q61321 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Six4Q61321 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.44■□□□□ 0.86
Six4Q61321 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.44■□□□□ 0.86
Six4Q61321 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Six4Q61321 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.44■□□□□ 0.86
Six4Q61321 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Six4Q61321 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.44■□□□□ 0.86
Six4Q61321 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Six4Q61321 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.44■□□□□ 0.86
Six4Q61321 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.43■□□□□ 0.86
Six4Q61321 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Six4Q61321 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six4Q61321 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.42■□□□□ 0.86
Six4Q61321 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Six4Q61321 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Six4Q61321 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.42■□□□□ 0.86
Six4Q61321 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six4Q61321 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Six4Q61321 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Six4Q61321 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.4■□□□□ 0.86
Six4Q61321 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.4■□□□□ 0.86
Six4Q61321 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Gm13241-201ENSMUST00000094493 780 ntBASIC20.4■□□□□ 0.86
Six4Q61321 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six4Q61321 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Six4Q61321 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Six4Q61321 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Six4Q61321 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Six4Q61321 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.39■□□□□ 0.85
Six4Q61321 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.39■□□□□ 0.85
Six4Q61321 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Six4Q61321 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Six4Q61321 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six4Q61321 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six4Q61321 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six4Q61321 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms