Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Fam105a-203ENSMUST00000226170 3043 ntBASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trav3-1Q5R1I8 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trav3-1Q5R1I8 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Gm42418-201ENSMUST00000182010 1831 ntBASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Trav3-1Q5R1I8 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trav3-1Q5R1I8 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trav3-1Q5R1I8 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trav3-1Q5R1I8 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
Trav3-1Q5R1I8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Gm6598-201ENSMUST00000202719 2615 ntBASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Gm35558-201ENSMUST00000222675 2219 ntBASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav3-1Q5R1I8 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 AC115037.1-201ENSMUST00000223391 2173 ntBASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Trav3-1Q5R1I8 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Gm37194-201ENSMUST00000193092 3031 ntBASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav3-1Q5R1I8 Gm5784-201ENSMUST00000179344 2478 ntBASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav3-1Q5R1I8 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trav3-1Q5R1I8 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav3-1Q5R1I8 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav3-1Q5R1I8 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms