Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC23.79■■□□□ 1.4
Limch1Q3UH68 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Limch1Q3UH68 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Limch1Q3UH68 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Limch1Q3UH68 Gm12821-201ENSMUST00000120022 600 ntBASIC23.77■■□□□ 1.4
Limch1Q3UH68 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Limch1Q3UH68 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Limch1Q3UH68 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Limch1Q3UH68 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Limch1Q3UH68 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC23.75■■□□□ 1.39
Limch1Q3UH68 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Limch1Q3UH68 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Golgb1-201ENSMUST00000023534 498 ntBASIC23.74■■□□□ 1.39
Limch1Q3UH68 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Limch1Q3UH68 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC23.73■■□□□ 1.39
Limch1Q3UH68 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Limch1Q3UH68 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Gm27454-201ENSMUST00000185090 204 ntBASIC23.72■■□□□ 1.39
Limch1Q3UH68 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC23.72■■□□□ 1.39
Limch1Q3UH68 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Limch1Q3UH68 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Limch1Q3UH68 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Limch1Q3UH68 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Limch1Q3UH68 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC23.71■■□□□ 1.39
Limch1Q3UH68 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Limch1Q3UH68 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Limch1Q3UH68 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Limch1Q3UH68 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC23.71■■□□□ 1.39
Limch1Q3UH68 AC152827.1-201ENSMUST00000221143 2189 ntBASIC23.71■■□□□ 1.39
Limch1Q3UH68 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
Limch1Q3UH68 Serp2-204ENSMUST00000228055 705 ntBASIC23.7■■□□□ 1.38
Limch1Q3UH68 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Limch1Q3UH68 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Limch1Q3UH68 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.69■■□□□ 1.38
Limch1Q3UH68 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Limch1Q3UH68 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Limch1Q3UH68 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Limch1Q3UH68 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Limch1Q3UH68 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Limch1Q3UH68 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms