Protein–RNA interactions for Protein: P97313

Prkdc, DNA-dependent protein kinase catalytic subunit, mousemouse

Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PrkdcP97313 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PrkdcP97313 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC14.24□□□□□ -0.13
PrkdcP97313 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC14.24□□□□□ -0.13
PrkdcP97313 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PrkdcP97313 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PrkdcP97313 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
PrkdcP97313 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC14.23□□□□□ -0.13
PrkdcP97313 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PrkdcP97313 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PrkdcP97313 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PrkdcP97313 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
PrkdcP97313 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC14.22□□□□□ -0.13
PrkdcP97313 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PrkdcP97313 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
PrkdcP97313 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PrkdcP97313 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PrkdcP97313 Gm9988-201ENSMUST00000069786 435 ntBASIC14.21□□□□□ -0.13
PrkdcP97313 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PrkdcP97313 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PrkdcP97313 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC14.21□□□□□ -0.13
PrkdcP97313 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PrkdcP97313 Gm10812-201ENSMUST00000099864 546 ntBASIC14.21□□□□□ -0.13
PrkdcP97313 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
PrkdcP97313 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PrkdcP97313 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC14.21□□□□□ -0.14
PrkdcP97313 Gm5408-201ENSMUST00000197998 747 ntBASIC14.21□□□□□ -0.14
PrkdcP97313 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PrkdcP97313 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PrkdcP97313 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PrkdcP97313 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PrkdcP97313 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PrkdcP97313 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC14.2□□□□□ -0.14
PrkdcP97313 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC14.2□□□□□ -0.14
PrkdcP97313 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PrkdcP97313 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PrkdcP97313 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PrkdcP97313 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PrkdcP97313 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
PrkdcP97313 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
PrkdcP97313 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PrkdcP97313 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC14.19□□□□□ -0.14
PrkdcP97313 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PrkdcP97313 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC14.18□□□□□ -0.14
PrkdcP97313 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC14.18□□□□□ -0.14
PrkdcP97313 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PrkdcP97313 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC14.18□□□□□ -0.14
PrkdcP97313 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PrkdcP97313 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PrkdcP97313 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.17□□□□□ -0.14
PrkdcP97313 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PrkdcP97313 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC14.17□□□□□ -0.14
PrkdcP97313 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC14.17□□□□□ -0.14
PrkdcP97313 Gm3807-201ENSMUST00000193520 1168 ntBASIC14.17□□□□□ -0.14
PrkdcP97313 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
PrkdcP97313 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PrkdcP97313 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Gm27045-201ENSMUST00000182145 1402 ntBASIC14.16□□□□□ -0.14
PrkdcP97313 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PrkdcP97313 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PrkdcP97313 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PrkdcP97313 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms