Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Cdx1P18111 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.1■□□□□ 0.17
Cdx1P18111 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Cdx1P18111 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Cdx1P18111 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC16.1■□□□□ 0.17
Cdx1P18111 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC16.1■□□□□ 0.17
Cdx1P18111 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Cdx1P18111 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdx1P18111 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdx1P18111 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdx1P18111 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdx1P18111 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Cdx1P18111 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdx1P18111 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC16.09■□□□□ 0.17
Cdx1P18111 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.09■□□□□ 0.17
Cdx1P18111 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdx1P18111 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Cdx1P18111 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Cdx1P18111 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.08■□□□□ 0.17
Cdx1P18111 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Cdx1P18111 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Cdx1P18111 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdx1P18111 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.07■□□□□ 0.16
Cdx1P18111 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC16.07■□□□□ 0.16
Cdx1P18111 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC16.07■□□□□ 0.16
Cdx1P18111 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Cdx1P18111 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.07■□□□□ 0.16
Cdx1P18111 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdx1P18111 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cdx1P18111 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.06■□□□□ 0.16
Cdx1P18111 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Cdx1P18111 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.06■□□□□ 0.16
Cdx1P18111 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC16.06■□□□□ 0.16
Cdx1P18111 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Gm13238-201ENSMUST00000117655 780 ntBASIC16.06■□□□□ 0.16
Cdx1P18111 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC16.06■□□□□ 0.16
Cdx1P18111 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdx1P18111 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Gm15039-201ENSMUST00000118914 875 ntBASIC16.05■□□□□ 0.16
Cdx1P18111 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Gm15820-201ENSMUST00000201566 728 ntBASIC16.05■□□□□ 0.16
Cdx1P18111 Rps24-207ENSMUST00000224568 714 ntBASIC16.05■□□□□ 0.16
Cdx1P18111 AC093043.1-201ENSMUST00000226700 898 ntBASIC16.05■□□□□ 0.16
Cdx1P18111 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC16.05■□□□□ 0.16
Cdx1P18111 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
Cdx1P18111 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Cdx1P18111 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdx1P18111 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cdx1P18111 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cdx1P18111 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.04■□□□□ 0.16
Cdx1P18111 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC16.04■□□□□ 0.16
Cdx1P18111 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC16.04■□□□□ 0.16
Cdx1P18111 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Cdx1P18111 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdx1P18111 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms