Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Hmgb3O54879 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC16.76■□□□□ 0.27
Hmgb3O54879 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Gm44949-201ENSMUST00000206423 1450 ntBASIC16.75■□□□□ 0.27
Hmgb3O54879 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.75■□□□□ 0.27
Hmgb3O54879 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC16.75■□□□□ 0.27
Hmgb3O54879 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb3O54879 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb3O54879 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb3O54879 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Hmgb3O54879 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Hmgb3O54879 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Hmgb3O54879 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb3O54879 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC16.74■□□□□ 0.27
Hmgb3O54879 AC117769.4-201ENSMUST00000225679 685 ntBASIC16.74■□□□□ 0.27
Hmgb3O54879 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb3O54879 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb3O54879 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.73■□□□□ 0.27
Hmgb3O54879 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Hmgb3O54879 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Hmgb3O54879 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC16.73■□□□□ 0.27
Hmgb3O54879 AC167019.3-201ENSMUST00000228225 1266 ntBASIC16.73■□□□□ 0.27
Hmgb3O54879 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Hmgb3O54879 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb3O54879 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb3O54879 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb3O54879 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC16.72■□□□□ 0.27
Hmgb3O54879 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb3O54879 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb3O54879 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb3O54879 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Gm11599-201ENSMUST00000118720 878 ntBASIC16.71■□□□□ 0.27
Hmgb3O54879 Gm7432-201ENSMUST00000210343 879 ntBASIC16.71■□□□□ 0.27
Hmgb3O54879 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb3O54879 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Hmgb3O54879 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb3O54879 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
Hmgb3O54879 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb3O54879 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb3O54879 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC16.69■□□□□ 0.26
Hmgb3O54879 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Hmgb3O54879 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Hmgb3O54879 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC16.69■□□□□ 0.26
Hmgb3O54879 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb3O54879 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms