Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.3■□□□□ 0.68
Clk4O35493 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk4O35493 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Clk4O35493 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk4O35493 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Clk4O35493 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk4O35493 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk4O35493 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Clk4O35493 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clk4O35493 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.29■□□□□ 0.68
Clk4O35493 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clk4O35493 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Clk4O35493 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.28■□□□□ 0.68
Clk4O35493 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk4O35493 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.27■□□□□ 0.68
Clk4O35493 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
Clk4O35493 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.27■□□□□ 0.68
Clk4O35493 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clk4O35493 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Clk4O35493 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Clk4O35493 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk4O35493 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Clk4O35493 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.26■□□□□ 0.67
Clk4O35493 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk4O35493 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk4O35493 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk4O35493 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Clk4O35493 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Clk4O35493 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Clk4O35493 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.25■□□□□ 0.67
Clk4O35493 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Clk4O35493 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.25■□□□□ 0.67
Clk4O35493 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk4O35493 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Clk4O35493 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Clk4O35493 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
Clk4O35493 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Clk4O35493 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.24■□□□□ 0.67
Clk4O35493 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Clk4O35493 Gm9847-201ENSMUST00000052528 599 ntBASIC19.24■□□□□ 0.67
Clk4O35493 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.24■□□□□ 0.67
Clk4O35493 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk4O35493 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Clk4O35493 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.23■□□□□ 0.67
Clk4O35493 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.23■□□□□ 0.67
Clk4O35493 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.23■□□□□ 0.67
Clk4O35493 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Clk4O35493 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk4O35493 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Clk4O35493 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Clk4O35493 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.22■□□□□ 0.67
Clk4O35493 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk4O35493 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk4O35493 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clk4O35493 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Clk4O35493 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.21■□□□□ 0.67
Clk4O35493 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 136.7 ms