Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps53Q8CCB4 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 AC153506.1-201ENSMUST00000218768 2915 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm13326-201ENSMUST00000118730 1011 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm14219-201ENSMUST00000120414 288 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm3150-201ENSMUST00000166418 204 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm8531-201ENSMUST00000188319 893 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm45113-201ENSMUST00000207518 165 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gm37969-201ENSMUST00000195777 3409 ntBASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps53Q8CCB4 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm13047-201ENSMUST00000117116 815 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm16166-201ENSMUST00000118291 787 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm10807-201ENSMUST00000177134 795 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 AC156501.1-201ENSMUST00000228219 270 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm23680-201ENSMUST00000083162 164 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Erich3-203ENSMUST00000189969 3460 ntBASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps53Q8CCB4 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps53Q8CCB4 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms