Protein–RNA interactions for Protein: P59240

Nphp4, Nephrocystin-4, mousemouse

Predictions only

Length 1,425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nphp4P59240 AC158388.3-202ENSMUST00000225517 775 ntBASIC15.04■□□□□ -0
Nphp4P59240 CT030195.2-201ENSMUST00000226074 1286 ntBASIC15.04■□□□□ -0
Nphp4P59240 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC15.04■□□□□ -0
Nphp4P59240 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Nphp4P59240 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 AC151836.1-201ENSMUST00000228730 1637 ntBASIC15.04■□□□□ -0
Nphp4P59240 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Nphp4P59240 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Nphp4P59240 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC15.04■□□□□ -0
Nphp4P59240 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Nphp4P59240 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 Prss23os-202ENSMUST00000179361 1362 ntBASIC15.03■□□□□ -0
Nphp4P59240 CT010480.4-201ENSMUST00000224654 2283 ntBASIC15.03■□□□□ -0
Nphp4P59240 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Gm5526-201ENSMUST00000153604 423 ntBASIC15.03■□□□□ -0
Nphp4P59240 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
Nphp4P59240 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Nphp4P59240 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Nphp4P59240 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Nphp4P59240 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC15.03■□□□□ -0
Nphp4P59240 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC15.03■□□□□ -0
Nphp4P59240 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC15.02■□□□□ -0
Nphp4P59240 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 Gm16518-201ENSMUST00000117960 508 ntBASIC15.02■□□□□ -0
Nphp4P59240 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC15.02■□□□□ -0
Nphp4P59240 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC15.02■□□□□ -0
Nphp4P59240 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 Gm5865-201ENSMUST00000198713 637 ntBASIC15.02■□□□□ -0
Nphp4P59240 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC15.02■□□□□ -0
Nphp4P59240 Nsmce2-203ENSMUST00000227173 1122 ntBASIC15.02■□□□□ -0
Nphp4P59240 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC15.02■□□□□ -0
Nphp4P59240 Gm25125-201ENSMUST00000083340 136 ntBASIC15.02■□□□□ -0
Nphp4P59240 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Nphp4P59240 Gm6478-201ENSMUST00000099450 742 ntBASIC15.02■□□□□ -0
Nphp4P59240 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
Nphp4P59240 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC15.02□□□□□ -0.01
Nphp4P59240 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC15.02□□□□□ -0.01
Nphp4P59240 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Nphp4P59240 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC15.02□□□□□ -0.01
Nphp4P59240 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC15.02□□□□□ -0.01
Nphp4P59240 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Nphp4P59240 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nphp4P59240 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC15.01□□□□□ -0.01
Nphp4P59240 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nphp4P59240 Mir1249-201ENSMUST00000116791 98 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
Nphp4P59240 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC15.01□□□□□ -0.01
Nphp4P59240 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nphp4P59240 Dnajc4-202ENSMUST00000179118 840 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nphp4P59240 Gm9625-201ENSMUST00000180422 955 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 Gm28671-201ENSMUST00000187036 692 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC15.01□□□□□ -0.01
Nphp4P59240 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Nphp4P59240 CT030652.1-201ENSMUST00000227377 1235 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 Gm10580-201ENSMUST00000097985 396 ntBASIC15.01□□□□□ -0.01
Nphp4P59240 Gm10582-201ENSMUST00000097987 396 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms