Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm38007-201ENSMUST00000192187 313 ntBASIC13□□□□□ -0.33
Col1a1P11087 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC13□□□□□ -0.33
Col1a1P11087 Gm40414-201ENSMUST00000197608 481 ntBASIC13□□□□□ -0.33
Col1a1P11087 Gm43866-201ENSMUST00000203894 839 ntBASIC13□□□□□ -0.33
Col1a1P11087 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC13□□□□□ -0.33
Col1a1P11087 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gm38111-201ENSMUST00000194817 2741 ntBASIC13□□□□□ -0.33
Col1a1P11087 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col1a1P11087 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col1a1P11087 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13□□□□□ -0.33
Col1a1P11087 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gm37472-201ENSMUST00000192342 4052 ntBASIC13□□□□□ -0.33
Col1a1P11087 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm29245-201ENSMUST00000187332 1416 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm12345-201ENSMUST00000119288 898 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Gm11736-201ENSMUST00000121468 505 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm15658-201ENSMUST00000148293 574 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm43106-201ENSMUST00000199485 637 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Ndufa4-205ENSMUST00000204978 610 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm45745-201ENSMUST00000211447 1180 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 AC154461.1-201ENSMUST00000224207 1005 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col1a1P11087 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col1a1P11087 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm8684-201ENSMUST00000195078 1564 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Col1a1P11087 Mettl18-202ENSMUST00000111490 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gm5766-201ENSMUST00000160520 1977 ntBASIC12.99□□□□□ -0.33
Col1a1P11087 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col1a1P11087 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Gm11473-201ENSMUST00000118980 359 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Gm38233-201ENSMUST00000194259 807 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC12.98□□□□□ -0.33
Col1a1P11087 Gm5424-201ENSMUST00000053865 1240 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Olfr1417-201ENSMUST00000061235 948 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col1a1P11087 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.98□□□□□ -0.33
Col1a1P11087 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Gm6560-201ENSMUST00000198588 1591 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col1a1P11087 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.98□□□□□ -0.33
Col1a1P11087 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col1a1P11087 Gm13624-201ENSMUST00000120263 462 ntBASIC12.97□□□□□ -0.33
Col1a1P11087 Gm12136-201ENSMUST00000120460 1209 ntBASIC12.97□□□□□ -0.33
Col1a1P11087 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms