Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.25□□□□□ -0.45
Chmp6P0C0A3 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chmp6P0C0A3 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm22711-201ENSMUST00000116890 133 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm15329-201ENSMUST00000121408 155 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm8737-201ENSMUST00000122208 642 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm22334-201ENSMUST00000158070 133 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm6485-201ENSMUST00000160676 439 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 AC158355.1-201ENSMUST00000215895 1705 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Gm9387-201ENSMUST00000098624 1320 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 AC153506.1-201ENSMUST00000218768 2915 ntBASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Chmp6P0C0A3 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Astn1-205ENSMUST00000193042 7248 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm15131-201ENSMUST00000119124 595 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm5523-201ENSMUST00000180415 997 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Gm14267-206ENSMUST00000226870 1209 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC12.23□□□□□ -0.45
Chmp6P0C0A3 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Chmp6P0C0A3 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms