Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ddx56Q9D0R4 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm15725-201ENSMUST00000119947 1090 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm25492-201ENSMUST00000157383 129 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm21092-201ENSMUST00000178995 955 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Mir7070-201ENSMUST00000183657 86 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm29067-201ENSMUST00000190821 470 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm5451-201ENSMUST00000080545 579 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 AC174797.1-201ENSMUST00000224339 1649 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ddx56Q9D0R4 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm15573-201ENSMUST00000119487 540 ntBASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Mir8115-201ENSMUST00000184992 119 ntBASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm44315-201ENSMUST00000203041 219 ntBASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ddx56Q9D0R4 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Ddx56Q9D0R4 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Ddx56Q9D0R4 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms