Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm13094-201ENSMUST00000117930 409 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm12129-201ENSMUST00000120104 1147 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm12461-201ENSMUST00000120231 1239 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Mir432-201ENSMUST00000157230 75 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm16165-201ENSMUST00000160140 795 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Cdx2P43241 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Cdx2P43241 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 1700009J07Rik-202ENSMUST00000185309 920 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm37197-201ENSMUST00000195607 401 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC10.73□□□□□ -0.69
Cdx2P43241 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 AC154435.1-201ENSMUST00000223938 959 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 AC138716.2-201ENSMUST00000226670 1016 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Gm38194-201ENSMUST00000194529 2211 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx2P43241 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC10.73□□□□□ -0.69
Cdx2P43241 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Cdx2P43241 Gm43152-201ENSMUST00000202495 1638 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 Gm44740-201ENSMUST00000205603 1614 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 AC164426.2-201ENSMUST00000225993 2492 ntBASIC10.73□□□□□ -0.69
Cdx2P43241 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx2P43241 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm12986-201ENSMUST00000119037 967 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Gm14113-201ENSMUST00000121399 976 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Gm16459-201ENSMUST00000121443 686 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC10.72□□□□□ -0.69
Cdx2P43241 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm7069-201ENSMUST00000182418 1008 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm19918-201ENSMUST00000194858 400 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Gm43854-201ENSMUST00000200418 394 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm43966-201ENSMUST00000203301 612 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm7589-201ENSMUST00000085631 534 ntBASIC10.72□□□□□ -0.69
Cdx2P43241 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Cdx2P43241 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Cdx2P43241 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Cdx2P43241 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx2P43241 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 68.8 ms