Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 4933430L12Rik-201ENSMUST00000206788 1194 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC13.1□□□□□ -0.31
Col1a1P11087 CT010486.3-201ENSMUST00000224555 811 ntBASIC13.1□□□□□ -0.31
Col1a1P11087 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col1a1P11087 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Col1a1P11087 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Gm7405-201ENSMUST00000121476 1337 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 B430203G13Rik-201ENSMUST00000169657 1375 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Gm15636-201ENSMUST00000119205 668 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm12009-201ENSMUST00000121361 1100 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC13.09□□□□□ -0.31
Col1a1P11087 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC13.09□□□□□ -0.31
Col1a1P11087 Gm25394-201ENSMUST00000157338 133 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm27826-201ENSMUST00000175282 255 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm37858-201ENSMUST00000192759 1231 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm42689-201ENSMUST00000202403 404 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm44420-201ENSMUST00000203669 490 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC13.09□□□□□ -0.31
Col1a1P11087 AC140314.1-201ENSMUST00000219549 554 ntBASIC13.09□□□□□ -0.31
Col1a1P11087 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col1a1P11087 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Col1a1P11087 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
Col1a1P11087 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col1a1P11087 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col1a1P11087 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col1a1P11087 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 AC151836.1-201ENSMUST00000228730 1637 ntBASIC13.08□□□□□ -0.32
Col1a1P11087 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm5764-201ENSMUST00000118817 885 ntBASIC13.08□□□□□ -0.32
Col1a1P11087 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Zfp655-204ENSMUST00000199003 601 ntTSL 2 BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm25514-201ENSMUST00000083860 135 ntBASIC13.08□□□□□ -0.32
Col1a1P11087 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Acnat1-201ENSMUST00000095086 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC13.08□□□□□ -0.32
Col1a1P11087 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col1a1P11087 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Ighv1-5-201ENSMUST00000103494 294 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Col1a1P11087 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC13.07□□□□□ -0.32
Col1a1P11087 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC13.07□□□□□ -0.32
Col1a1P11087 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC13.07□□□□□ -0.32
Col1a1P11087 Gm26174-201ENSMUST00000158415 219 ntBASIC13.07□□□□□ -0.32
Col1a1P11087 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC13.07□□□□□ -0.32
Col1a1P11087 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
Col1a1P11087 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col1a1P11087 Gm6794-201ENSMUST00000203829 457 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms