Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm29164-201ENSMUST00000185454 1024 ntBASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Gm21027-201ENSMUST00000219300 1236 ntBASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Lima1Q9ERG0 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm23949-201ENSMUST00000104027 127 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm24749-201ENSMUST00000157838 343 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm7003-201ENSMUST00000195089 312 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm43184-201ENSMUST00000197247 542 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm2553-201ENSMUST00000215986 605 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm270-201ENSMUST00000223010 976 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Gm18210-201ENSMUST00000209001 1524 ntBASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Lima1Q9ERG0 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm11509-201ENSMUST00000117358 325 ntBASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm11500-201ENSMUST00000118237 601 ntBASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Gm18038-201ENSMUST00000197900 485 ntBASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.12□□□□□ -0.63
Lima1Q9ERG0 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 108.3 ms