Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Sox9Q04887 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sox9Q04887 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.73□□□□□ -0.53
Sox9Q04887 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
Sox9Q04887 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm15374-201ENSMUST00000119313 844 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm6758-201ENSMUST00000119643 1055 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm13347-201ENSMUST00000120298 1353 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC11.73□□□□□ -0.53
Sox9Q04887 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm16547-201ENSMUST00000159474 293 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm4705-201ENSMUST00000177415 354 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 2810049E08Rik-201ENSMUST00000185600 1102 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Eloc-208ENSMUST00000188641 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Ighv5-8-202ENSMUST00000191967 337 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm5190-201ENSMUST00000192434 357 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm30946-201ENSMUST00000198288 724 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Wbp1-209ENSMUST00000205023 716 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Sox9Q04887 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Prss1-201ENSMUST00000031910 805 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Haao-201ENSMUST00000000687 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Ccdc136-201ENSMUST00000096084 3826 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Sox9Q04887 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox9Q04887 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.73□□□□□ -0.53
Sox9Q04887 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Sox9Q04887 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm20495-201ENSMUST00000173902 235 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Gm27826-201ENSMUST00000175282 255 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Gm27444-201ENSMUST00000184157 137 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm29067-201ENSMUST00000190821 470 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC11.72□□□□□ -0.53
Sox9Q04887 AC134601.2-201ENSMUST00000221071 130 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Sox9Q04887 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Gm25580-201ENSMUST00000083409 327 ntBASIC11.72□□□□□ -0.53
Sox9Q04887 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox9Q04887 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms