Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Shmt1P50431 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Shmt1P50431 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Shmt1P50431 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Shmt1P50431 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Shmt1P50431 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 AC130823.1-201ENSMUST00000228929 1549 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Shmt1P50431 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC11.93□□□□□ -0.5
Shmt1P50431 Mup-ps29-201ENSMUST00000122281 202 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 AC134248.1-201ENSMUST00000216113 1176 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.93□□□□□ -0.5
Shmt1P50431 AC136376.2-201ENSMUST00000228819 490 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Shmt1P50431 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 AC174797.1-201ENSMUST00000224339 1649 ntBASIC11.93□□□□□ -0.5
Shmt1P50431 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Shmt1P50431 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Shmt1P50431 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm44153-201ENSMUST00000204162 1580 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.92□□□□□ -0.5
Shmt1P50431 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Shmt1P50431 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.92□□□□□ -0.5
Shmt1P50431 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm14892-201ENSMUST00000117636 267 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 Gm9133-201ENSMUST00000118289 540 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.92□□□□□ -0.5
Shmt1P50431 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC11.92□□□□□ -0.5
Shmt1P50431 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC11.92□□□□□ -0.5
Shmt1P50431 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC11.92□□□□□ -0.5
Shmt1P50431 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm19009-201ENSMUST00000223072 823 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 AC164618.2-201ENSMUST00000224770 573 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 AC099645.1-201ENSMUST00000226476 1105 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC11.92□□□□□ -0.5
Shmt1P50431 Gm37859-201ENSMUST00000195529 2173 ntBASIC11.92□□□□□ -0.5
Shmt1P50431 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Shmt1P50431 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Shmt1P50431 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Shmt1P50431 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC11.91□□□□□ -0.5
Shmt1P50431 Selenot-ps-201ENSMUST00000119098 593 ntBASIC11.91□□□□□ -0.5
Shmt1P50431 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 92.3 ms