Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Igkv2-116-201ENSMUST00000199327 362 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm9299-201ENSMUST00000206392 1140 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm5035-201ENSMUST00000215581 927 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Wdyhv1-206ENSMUST00000227142 786 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Clasp1-214ENSMUST00000189570 5502 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 CT025681.1-201ENSMUST00000225453 1855 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Usp47-206ENSMUST00000215510 4697 ntTSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Sik2-206ENSMUST00000176824 5369 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Sipa1l2-201ENSMUST00000108775 6365 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Hivep3-209ENSMUST00000166542 7253 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm19178-201ENSMUST00000217524 1819 ntBASIC9.31□□□□□ -0.92
Hmgb3O54879 Rad50-201ENSMUST00000020649 5153 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC9.31□□□□□ -0.92
Hmgb3O54879 Rnpc3-201ENSMUST00000092154 3888 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hmgb3O54879 Gm44663-201ENSMUST00000206898 3150 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm43274-201ENSMUST00000202545 5000 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Clasp1-220ENSMUST00000191445 4914 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Rnft2-201ENSMUST00000117177 4381 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm11658-201ENSMUST00000120913 1008 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm2467-201ENSMUST00000182266 1010 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm6981-201ENSMUST00000182467 1008 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm6439-201ENSMUST00000199849 862 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC9.3□□□□□ -0.92
Hmgb3O54879 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Sap18-204ENSMUST00000128764 5125 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Cdk12-201ENSMUST00000003203 4837 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Tenm4-202ENSMUST00000107165 10930 ntAPPRIS P4 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Klhl32-203ENSMUST00000108214 5970 ntTSL 5 BASIC9.3□□□□□ -0.92
Hmgb3O54879 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Clock-201ENSMUST00000075159 7478 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hmgb3O54879 AA474408-201ENSMUST00000098110 3339 ntBASIC9.3□□□□□ -0.92
Hmgb3O54879 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Zmym6-201ENSMUST00000046751 4210 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Zfp110-201ENSMUST00000004614 3591 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hmgb3O54879 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hmgb3O54879 Ttc23-201ENSMUST00000032774 2492 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms