Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gm16219-201ENSMUST00000120096 274 ntBASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gm17391-201ENSMUST00000171036 126 ntBASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gm43058-201ENSMUST00000197645 625 ntBASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm43947-201ENSMUST00000203019 959 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Gm44153-201ENSMUST00000204162 1580 ntBASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Brf1Q8CFK2 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Brf1Q8CFK2 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms