Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Rgr-203ENSMUST00000225070 4704 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 H2-Q3-201ENSMUST00000172583 608 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm27438-201ENSMUST00000183480 110 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr293-201ENSMUST00000081474 1011 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm19327-201ENSMUST00000220651 3271 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sh3rf1Q69ZI1 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm44369-201ENSMUST00000204543 2175 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm27530-201ENSMUST00000184096 98 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm5733-201ENSMUST00000190232 939 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm43830-201ENSMUST00000198760 1067 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm4482-201ENSMUST00000200876 742 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm19324-201ENSMUST00000213229 1169 ntBASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sh3rf1Q69ZI1 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 96.1 ms