Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm15744-201ENSMUST00000161734 213 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Gm17709-201ENSMUST00000174536 1096 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Gm23694-201ENSMUST00000179335 110 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm37028-201ENSMUST00000194276 107 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Gm43966-201ENSMUST00000203301 612 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Gm17230-201ENSMUST00000171194 3942 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Traf1P39428 n-R5s84-201ENSMUST00000122591 109 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC13.13□□□□□ -0.31
Traf1P39428 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Gm3793-201ENSMUST00000204973 672 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Gm6722-201ENSMUST00000221586 390 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Traf1P39428 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC13.13□□□□□ -0.31
Traf1P39428 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Gm43375-201ENSMUST00000196705 2480 ntBASIC13.13□□□□□ -0.31
Traf1P39428 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Traf1P39428 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 AC158636.1-201ENSMUST00000220118 1393 ntBASIC13.12□□□□□ -0.31
Traf1P39428 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC13.12□□□□□ -0.31
Traf1P39428 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
Traf1P39428 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC13.12□□□□□ -0.31
Traf1P39428 Gm3329-201ENSMUST00000159873 556 ntBASIC13.12□□□□□ -0.31
Traf1P39428 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Mir7051-201ENSMUST00000184167 73 ntBASIC13.12□□□□□ -0.31
Traf1P39428 Gm3017-201ENSMUST00000203603 1126 ntBASIC13.12□□□□□ -0.31
Traf1P39428 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC13.12□□□□□ -0.31
Traf1P39428 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Traf1P39428 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Traf1P39428 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
Traf1P39428 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Traf1P39428 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Traf1P39428 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Traf1P39428 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Traf1P39428 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC13.12□□□□□ -0.31
Traf1P39428 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Traf1P39428 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms